PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18209-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 102aa    MW: 11863.4 Da    PI: 10.103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18209-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.54.9e-182370555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hn  ErrRRd+iN+++  L+ellP++   ++   +K+++L +A++Y+ksLq
  TRIUR3_18209-P1 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEAIDYLKSLQ 70
                     99************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-201678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4791869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-152374No hitNo description
PfamPF000102.8E-152370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-202377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-182475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD  60
EAIDYLKSLQ LQLQEQRGVV GSSSGHNGGW IPERNSSYNF ME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504584e-83AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.
GenBankAK2505724e-83AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146943.12e-37protein SPATULA
RefseqXP_008667887.12e-37PREDICTED: protein SPATULA isoform X1
RefseqXP_008667886.12e-37PREDICTED: protein SPATULA isoform X1
RefseqXP_014661031.12e-37PREDICTED: transcription factor PIF1-like
RefseqXP_010240432.13e-37PREDICTED: transcription factor PIF1-like isoform X2
RefseqXP_003580559.13e-37PREDICTED: transcription factor PIF1-like isoform X1
SwissprotO805361e-25PIF3_ARATH; Transcription factor PIF3
TrEMBLM7ZIX07e-72M7ZIX0_TRIUA; Transcription factor PIF3
STRINGMLOC_36345.31e-46(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-27phytochrome interacting factor 3